sklearn.neighbors
.radius_neighbors_graph¶

sklearn.neighbors.
radius_neighbors_graph
(X, radius, mode='connectivity', metric='minkowski', p=2, metric_params=None, include_self=False, n_jobs=1)¶ Computes the (weighted) graph of Neighbors for points in X
Neighborhoods are restricted the points at a distance lower than radius.
Read more in the User Guide.
Parameters: X : arraylike or BallTree, shape = [n_samples, n_features]
Sample data, in the form of a numpy array or a precomputed
BallTree
.radius : float
Radius of neighborhoods.
mode : {‘connectivity’, ‘distance’}, optional
Type of returned matrix: ‘connectivity’ will return the connectivity matrix with ones and zeros, and ‘distance’ will return the distances between neighbors according to the given metric.
metric : string, default ‘minkowski’
The distance metric used to calculate the neighbors within a given radius for each sample point. The DistanceMetric class gives a list of available metrics. The default distance is ‘euclidean’ (‘minkowski’ metric with the param equal to 2.)
p : int, default 2
Power parameter for the Minkowski metric. When p = 1, this is equivalent to using manhattan_distance (l1), and euclidean_distance (l2) for p = 2. For arbitrary p, minkowski_distance (l_p) is used.
metric_params : dict, optional
additional keyword arguments for the metric function.
include_self : bool, default=False
Whether or not to mark each sample as the first nearest neighbor to itself. If None, then True is used for mode=’connectivity’ and False for mode=’distance’ as this will preserve backwards compatibilty.
n_jobs : int, optional (default = 1)
The number of parallel jobs to run for neighbors search. If
1
, then the number of jobs is set to the number of CPU cores.Returns: A : sparse matrix in CSR format, shape = [n_samples, n_samples]
A[i, j] is assigned the weight of edge that connects i to j.
See also
Examples
>>> X = [[0], [3], [1]] >>> from sklearn.neighbors import radius_neighbors_graph >>> A = radius_neighbors_graph(X, 1.5, mode='connectivity', include_self=True) >>> A.toarray() array([[ 1., 0., 1.], [ 0., 1., 0.], [ 1., 0., 1.]])